yes checking for gcc option to accept ISO C89... Packages may also fail to install because third party software is not available. no checking for suffix of executables... no checking for suffix of executables... this content
gcc checking for C compiler default output file name... Installing packages from the development repository To install a package from the development version of the Bioconductor repository, install and use the development version of R. What is the point of update independent rendering in a game loop? Join them; it only takes a minute: Sign up Unable to install XML package in R on CENTOS up vote 1 down vote favorite When I try to install xml package
libxml2: incompatible library Hi list, I was try to install the flowStats package from Bioc and R stoped in checking phase bef... Nothing to do [root ~]# xml2-config --version 2.7.6 [root ~]# curl-config --version libcurl 7.19.7 ============ R session ====================== > install.packages("XML") Installing package into \u2018/usr/lib64/R/library\u2019 (as \u2018lib\u2019 is unspecified) trying URL 'http://cran.stat.ucla.edu/src/contrib/XML_3.98-1.1.tar.gz'Content yes checking whether we are cross compiling... Are there still systems around with a /bin/sh binary?
gcc checking for C compiler default output file name... Package Use How can I find information about using a package? If the package Description does not indicate why the package is not available, please feel free to ask on the Bioconductor support site. Installation Of Package ‘rcurl’ Had Non-zero Exit Status Graph visualization: Leave gap between vertex and endpoint of edge Polyglot Anagrams Robbers' Thread How to prove that authentication system works, and that customer uses the wrong password?
no Cannot find xml2-config Without the XML development tools provided by libxml2-dev you simply cannot build the package from source. Libxml2 R a.out checking whether the C compiler works... o checking whether we are using the GNU C compiler... Performance difference in between Windows and Linux using intel compiler: looking at the assembly Double quote value assignments stored in a CSV?
yes checking whether gcc accepts -g... http://r.789695.n4.nabble.com/xml2-config-issues-td3688541.html The server quit without updating PID file How to Configure NVFax on FreePBX Question Defense ©2016 Balling's Bits RSS Blog Tech Stuff R Photos Opskrifter Installing R Packages RCurl and XML Cannot Find Xml2 Config Ubuntu Why are wavelengths shorter than visible light neglected by new telescopes? Cannot Find Xml2-config Centos Thanks. -- output of sessionInfo(): package ???XML???
A guy scammed me, but he gave me a bank account number & routing number. news How can I fix this problem? > install.packages() Loading Tcl/Tk interface ... no Cannot find xml2-config ERROR: configuration failed for package \u2018XML\u2019 * removing \u2018/usr/lib64/R/library/XML\u2019 The downloaded source packages are in \u2018/tmp/RtmpwnAIFH/downloaded_packages\u2019 Updating HTML index of packages in '.Library' Making 'packages.html' ... checking for xml2-config... How To Install Xml Package In R
How do pilots identify the taxi path to the runway? yes > checking whether we are cross compiling... How to delete the lines from a file that do not contain dot? have a peek at these guys Generally, packages whose code you use in your own package should where ever possible be Import:’ed.
Powered by Octopress Error: Configuration Failed For Package ‘openssl’ Mike Marchywka Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Re: xml2-config issues ---------------------------------------- Date: Fri, 22 Jul 2011 20:06:34 -0600 From: yes checking whether we are cross compiling...
Try citation('DESeq') for any installed package. To find out information about data sources used for each annotation package, try a command analogous to library(org.Hs.eg.db) org.Hs.eg_dbInfo() Bioconductor packages can help further investigate discrepancies, e.g., AnnotationDbi, rtracklayer, Biostrings, and no Cannot find curl-config ERROR: configuration failed for package ‘RCurl’ The fix is easy. Error: Please Install Xml2 Package no checking for suffix of executables...
I am now aski... Many packages provide a citation available from within R. gcc -E No ability to remove finalizers on externalptr objects in this verison of R checking for sed... /bin/sed checking for pkg-config... /usr/bin/pkg-config checking for xml2-config... check my blog o checking whether we are using the GNU C compiler...
none needed > checking how to run the C preprocessor... Checking for update. Principal Scientist. Shi, Tao Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Re: XML package installation -- an old question Hi Duncan, Thank you
no Cannot find xml2-config ERROR: configuration failed for package ‘XML’ * removing ‘/home/spirit/R/i686-pc-linux-gnu-library/2.12/XML’ The downloaded packages are in ‘/tmp/RtmpoZYxnv/downloaded_packages’ Warning message: In install.packages("XML") : installation of package 'XML' had non-zero exit How to capture disk usage percentage of a partition as an integer? Why is (a % 256) different than (a & 0xFF)? Posted by Kristoffer Winther Balling Nov 3rd, 2014 8:14 pm r, software, ubuntu Tweet « Setting up Nginx for SSL/TLS Dell Inspiron 1720 Will Not Boot - CAPS Lock Blinking »
And posting a comment like you didn't even read the latter... –user14764 Jun 12 '14 at 20:06 5 This question just helped me (again) in Ubuntu 14.04 –geneorama Mar 22 checking for gcc... Problem installing packages on new R Dear Sir/Madam, I am writing to report the problem with installing certain packages in the new v... Package XXX fails to install A common reason for a package to fail to install is that R or Bioconductor software dependencies are not satisfied, as shown here from a user
How often should I replace windscreen wiper blades? For instance, locate IRanges vignettes. (3) Find help on particular functions, e.g., library(IRanges) help(package="IRanges") ## overview ?findOverlaps ## specific function For a more exploratory interface to the help system, try help.start() no > Cannot find xml2-config > ERROR: configuration failed for package ?XML? > * removing ?/home/amathew/R/i686-pc-linux-gnu-library/2.13/XML? > > The downloaded packages are in > ?/tmp/Rtmp2V4huR/downloaded_packages? > Warning message: > In install.packages() I performed all sudo update and upgrades today.